PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016464932.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 417aa    MW: 46058.5 Da    PI: 9.4717
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016464932.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00037182204223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                      C+ Cg  F+  +nL+ H+ + H
  XP_016464932.1 182 ICSECGDIFTKLENLELHQAVrH 204
                     5******************9888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.182181209IPR007087Zinc finger, C2H2
PROSITE patternPS000280183204IPR007087Zinc finger, C2H2
SuperFamilySSF563994.89E-23206416No hitNo description
Gene3DG3DSA:3.90.228.101.4E-13207415IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MAKSKRNPSI KQSKQSSKSR SSSHGQKEEK PHSWAVVRSL FTCKHLQARP EQQIILKEEK  60
IPKCEERGDN NKKCKKMKCS GSICSNTKVM HRPEPSPSPP KGRSCKNNGS TKVTLNNNNA  120
ISSFSSASSS SSSFSLHSTS APSTSPTTSS LRGMPFRKLS GCYECRMVVD PIARDPSLRS  180
TICSECGDIF TKLENLELHQ AVRHAVSELG PEDTSRNIVE IIFQSSWLNK KTPVCKIDRI  240
LKIRNTPRTI SRFEEYRDGI KAKATNLPKK HPRCIADGNE LLRFHCTTFM CSLGLNGSSN  300
LCTVPNCNIC TIIKNGFKLA TTDGTKKGIL TTATSGKAHD STRVVPDDDD DDDDDNDKRA  360
MLVCRVIAGR VKKNLDGNLE EYDSIAGAAG VYSNLDELYV FNPKAILPCF VVIYKGF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754501e-98HG975450.1 Solanum pennellii chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016464932.10.0PREDICTED: uncharacterized protein LOC107787841
TrEMBLK4D6C60.0K4D6C6_SOLLC; Uncharacterized protein
STRINGSolyc11g013220.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107231517
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-101C2H2-like zinc finger protein